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What is the difference between blastn and tblastn?
Why E-value is dependent on the database and query size?
Why BLAST hits with higher scores tend to have lower E-value?
If you want to find more distant homologs in BLAST search, what scoring matrix would you use?
Briefly describe SCOP’s protein classification scheme.
Briefly describe SCOP’s protein classification scheme.
Is GO database a sequence database? Why?
What are the two member databases of UniProtKB? How are they different?
What are the major protein sequence databases?
If you see an NCBI accession numbers start with NM_, what does it mean? What about XP_, NC_, NW_, NZ_?
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